HIV Target gene Detail Information

> HPCAL1 Gene Search Result

Gene Information

Gene Name	HPCAL1
Gene ID	3241
Gene Full Name	hippocalcin like 1
Gene Alias	BDR1; HLP2; VILIP-3
Transcripts	ENSG00000115756
Virus	HIV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	P37235
HGNC ID	HGNC:5145
VEGA ID	OTTHUMG00000090451
OMIM ID	600207
String ID	9606.ENSP00000483786
PharmGKB ID	PA29418

Target gene [HPCAL1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002234	chr2	67	24	13	104	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of HPCAL1 expression and immune infiltrating cell level correlation result in HIV+ samples
HPCAL1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of HPCAL1 expression and immune infiltrating cell level correlation result in HIV+ samples
HPCAL1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).