HTLV1 Target gene Detail Information

> HMSD Gene Search Result

Gene Information

Gene Name	HMSD
Gene ID	284293
Gene Full Name	histocompatibility minor serpin domain containing
Gene Alias	ACC6; ACC-6; HSMD-v; C18orf53
Transcripts	ENSG00000221887
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID	A8MTL9; P0C7T4
HGNC ID	HGNC:23037
VEGA ID	OTTHUMG00000060593
OMIM ID	612086
String ID	9606.ENSP00000386207
PharmGKB ID	PA162391030

Target gene [HMSD] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6015616	chr18	8	5	1	14	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of HMSD expression and immune infiltrating cell level correlation result in HTLV1+ samples
HMSD expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).