HIV Target gene Detail Information

> GS1-124K5.11 Gene Search Result

Gene Information

Gene Name	GS1-124K5.11
Gene ID	493754
Gene Full Name	RAB guanine nucleotide exchange factor 1 pseudogene
Transcripts	ENSG00000229180
Virus	HIV
Gene Type	pseudo
HPA Location Info

Target gene [GS1-124K5.11] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4007283	chr7	20			20	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of GS1-124K5.11 expression and immune infiltrating cell level correlation result in HIV+ samples
GS1-124K5.11 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).