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HTLV1 Target gene Detail Information

> GRIA3 Gene Search Result


Gene Information
Gene Name GRIA3
Gene ID 2892
Gene Full Name glutamate ionotropic receptor AMPA type subunit 3
Gene Alias GLUR3; GLURC; GluA3; MRX94; GLUR-C; GLUR-K3
Transcripts ENSG00000125675
Virus HTLV1
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Potential drug targets, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID P42263
HGNC ID HGNC:4573
VEGA ID OTTHUMG00000022685
OMIM ID 305915
String ID 9606.ENSP00000481554
Drugbank ID BE0000831
PharmGKB ID PA28968
Target gene [GRIA3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6029963 chrX 1 1 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of GRIA3 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GRIA3 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of GRIA3 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GRIA3 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of GRIA3 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GRIA3 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).