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HBV Target gene Detail Information

> GPC6 Gene Search Result


Gene Information
Gene Name GPC6
Gene ID 10082
Gene Full Name glypican 6
Gene Alias OMIMD1
Transcripts ENSG00000183098
Virus HBV
Gene Type protein coding
HPA Location Info Golgi apparatus;Vesicles;
HPA Protein Class Info Disease related genes, Predicted intracellular proteins
Uniport_ID Q9Y625
HGNC ID HGNC:4454
VEGA ID OTTHUMG00000017205
OMIM ID 604404
String ID 9606.ENSP00000366246
PharmGKB ID PA28835
Target gene [GPC6] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1009461 chr13 15 1 16 View
1012093 chr13 5 2 7 View
1015246 chr13 1 1 2 View
1017155 chr13 1 1 View
1402569 chr13 5 2 7 View
1403028 chr13 0 View
1403029 chr13 1 1 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of GPC6 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
GPC6 expression: Low -> High
Lollipop of GPC6 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of GPC6 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of GPC6 expression and immune infiltrating cell level correlation result in HBV+ samples
GPC6 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).