HTLV1 Target gene Detail Information

> GOLGA6B Gene Search Result

Gene Information

Gene Name	GOLGA6B
Gene ID	55889
Gene Full Name	golgin A6 family member B
Gene Alias	GOLGA; GOLGA6D
Transcripts	ENSG00000215186
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Vesicles;Centrosome;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	A6NDN3
HGNC ID	HGNC:32205
VEGA ID	OTTHUMG00000133511
String ID	9606.ENSP00000408132
PharmGKB ID	PA162389878

Target gene [GOLGA6B] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6005885	chr15	44	31	4	79	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of GOLGA6B expression and immune infiltrating cell level correlation result in HTLV1+ samples
GOLGA6B expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).