HTLV1 Target gene Detail Information

> GGTLC2 Gene Search Result

Gene Information

Gene Name	GGTLC2
Gene ID	91227
Gene Full Name	gamma-glutamyltransferase light chain 2
Gene Alias	GGTL4
Transcripts	ENSG00000100121
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q14390
HGNC ID	HGNC:18596
VEGA ID	OTTHUMG00000151177
OMIM ID	612339
String ID	9606.ENSP00000419751
PharmGKB ID	PA162389523

Target gene [GGTLC2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6006806	chr22	52	10		62	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of GGTLC2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GGTLC2 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of GGTLC2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GGTLC2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).