HTLV1 Target gene Detail Information

> GGPS1 Gene Search Result

Gene Information

Gene Name	GGPS1
Gene ID	9453
Gene Full Name	geranylgeranyl diphosphate synthase 1
Gene Alias	GGPPS; GGPPS1
Transcripts	ENSG00000152904
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Enzymes, FDA approved drug targets, Plasma proteins, Predicted intracellular proteins
Uniport_ID	O95749
HGNC ID	HGNC:4249
VEGA ID	OTTHUMG00000037963
OMIM ID	606982
String ID	9606.ENSP00000282841
Drugbank ID	BE0003570
PharmGKB ID	PA28661

Target gene [GGPS1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6007119	chr1	46	13		59	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of GGPS1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GGPS1 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of GGPS1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GGPS1 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of GGPS1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GGPS1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).