HBV Target gene Detail Information

> GGA1 Gene Search Result

Gene Information

Gene Name	GGA1
Gene ID	26088
Gene Full Name	golgi associated, gamma adaptin ear containing, ARF binding protein 1
Transcripts	ENSG00000100083
Virus	HBV
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Vesicles;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q9UJY5
HGNC ID	HGNC:17842
VEGA ID	OTTHUMG00000030985
OMIM ID	606004
String ID	9606.ENSP00000341344
PharmGKB ID	PA28657

Target gene [GGA1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1001539	chr22	232	240	164	636	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of GGA1 expression and immune infiltrating cell level correlation result in HBV+ samples
GGA1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).