HIV Target gene Detail Information

> GDPD3 Gene Search Result


Gene Information
Gene Name GDPD3
Gene ID 79153
Gene Full Name glycerophosphodiester phosphodiesterase domain containing 3
Gene Alias GDE7
Transcripts ENSG00000102886
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;Cytokinetic bridge;Cytosol;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q7L5L3
HGNC ID HGNC:28638
VEGA ID OTTHUMG00000132106
OMIM ID 616318
String ID 9606.ENSP00000384363
PharmGKB ID PA142671741
Target gene [GDPD3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4012241 chr16 3 2 5 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of GDPD3 expression and immune infiltrating cell level correlation result in HIV+ samples
GDPD3 expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of GDPD3 expression and immune infiltrating cell level correlation result in HIV+ samples
GDPD3 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).