HIV Target gene Detail Information

> GATAD2B Gene Search Result

Gene Information

Gene Name	GATAD2B
Gene ID	57459
Gene Full Name	GATA zinc finger domain containing 2B
Gene Alias	p68; MRD18; P66beta
Transcripts	ENSG00000261992
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Disease related genes, Plasma proteins, Predicted intracellular proteins, Transcription factors
Uniport_ID	Q8WXI9
HGNC ID	HGNC:30778
VEGA ID	OTTHUMG00000175260
OMIM ID	614998
String ID	9606.ENSP00000357644
PharmGKB ID	PA142671747

Target gene [GATAD2B] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000245	chr1	560	18	73	651	View
4000695	chr1	81	155	78	314	View
4006504	chr1	20	3	1	24	View
4010474	chr1	7	2		9	View
4011416	chr1	7			7	View
4011547	chr1	6			6	View
4011548	chr1	5	1		6	View
4011674	chr1	4	2		6	View
4012042	chr1	4	1		5	View
4012183	chr1	4	1		5	View
4012184	chr1	5			5	View
4014115	chr1	2			2	View
4014960	chr1	1			1	View
4014961	chr1	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of GATAD2B expression and immune infiltrating cell level correlation result in HIV+ samples
GATAD2B expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of GATAD2B expression and immune infiltrating cell level correlation result in HIV+ samples
GATAD2B expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).