HTLV1 Target gene Detail Information

> GALNT17 Gene Search Result

Gene Information

Gene Name	GALNT17
Gene ID	64409
Gene Full Name	polypeptide N-acetylgalactosaminyltransferase 17
Gene Alias	GALNT16; GALNT20; GALNTL3; WBSCR17; GALNACT17; GalNAc-T17; GalNAc-T19; GalNAc-T5L
Transcripts	ENSG00000185274
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Nucleoplasm;Nuclear bodies;Nucleoli;
HPA Protein Class Info	Disease related genes, Enzymes, Potential drug targets, Predicted intracellular proteins
Uniport_ID	Q6IS24
HGNC ID	HGNC:16347
OMIM ID	615137
PharmGKB ID	PA38124

Target gene [GALNT17] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6005515	chr7	1	36	49	86	View
6023656	chr7	2	2		4	View
6024150	chr7	4			4	View
6027565	chr7	2			2	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of GALNT17 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GALNT17 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of GALNT17 expression and immune infiltrating cell level correlation result in HTLV1+ samples
GALNT17 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).