HIV Target gene Detail Information

> FOCAD Gene Search Result

Gene Information

Gene Name	FOCAD
Gene ID	54914
Gene Full Name	focadhesin
Gene Alias	KIAA1797
Transcripts	ENSG00000188352
Virus	HIV
Gene Type	protein coding
HPA Location Info	Mitochondria;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q5VW36
HGNC ID	HGNC:23377
VEGA ID	OTTHUMG00000066930
OMIM ID	614606
String ID	9606.ENSP00000369599
PharmGKB ID	PA134934777

Target gene [FOCAD] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000822	chr9	262	2	8	272	View
4012138	chr9	5			5	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of FOCAD expression and immune infiltrating cell level correlation result in HIV+ samples
FOCAD expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).