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HIV Target gene Detail Information

> FANCA Gene Search Result


Gene Information
Gene Name FANCA
Gene ID 2175
Gene Full Name FA complementation group A
Gene Alias FA; FA1; FAA; FAH; FA-H; FACA; FANCH
Transcripts ENSG00000187741
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Cancer-related genes, Disease related genes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID O15360
HGNC ID HGNC:3582
VEGA ID OTTHUMG00000173049
OMIM ID 607139
String ID 9606.ENSP00000373952
PharmGKB ID PA27995
Target gene [FANCA] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001252 chr16 141 11 34 186 View
4001414 chr16 168 168 View
4002482 chr16 79 5 6 90 View
4003186 chr16 36 27 4 67 View
4003550 chr16 7 19 33 59 View
4003985 chr16 29 20 2 51 View
4007505 chr16 15 4 19 View
4008200 chr16 16 16 View
4008768 chr16 8 4 2 14 View
4009020 chr16 10 3 13 View
4009177 chr16 9 3 12 View
4009328 chr16 9 3 12 View
4009542 chr16 9 2 11 View
4009927 chr16 9 1 10 View
4012461 chr16 5 5 View
4012589 chr16 2 2 1 5 View
4014606 chr16 1 1 2 View
4300095 chr16 3 3 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of FANCA expression and immune infiltrating cell level correlation result in HIV+ samples
FANCA expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).