HIV Target gene Detail Information

> FAM78A Gene Search Result

Gene Information

Gene Name	FAM78A
Gene ID	286336
Gene Full Name	family with sequence similarity 78 member A
Gene Alias	C9orf59
Transcripts	ENSG00000126882
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Vesicles;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q5JUQ0
HGNC ID	HGNC:25465
VEGA ID	OTTHUMG00000020821
String ID	9606.ENSP00000361345
PharmGKB ID	PA134970135

Target gene [FAM78A] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004732	chr9	38	2		40	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of FAM78A expression and immune infiltrating cell level correlation result in HIV+ samples
FAM78A expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).