HIV Target gene Detail Information

> FAM20B Gene Search Result

Gene Information

Gene Name	FAM20B
Gene ID	9917
Gene Full Name	FAM20B, glycosaminoglycan xylosylkinase
Gene Alias	gxk1
Transcripts	ENSG00000116199
Virus	HIV
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	O75063
HGNC ID	HGNC:23017
VEGA ID	OTTHUMG00000035073
OMIM ID	611063
String ID	9606.ENSP00000263733
PharmGKB ID	PA134930918

Target gene [FAM20B] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4015210	chr1	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of FAM20B expression and immune infiltrating cell level correlation result in HIV+ samples
FAM20B expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of FAM20B expression and immune infiltrating cell level correlation result in HIV+ samples
FAM20B expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).