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HIV Target gene Detail Information

> FAM193A Gene Search Result


Gene Information
Gene Name FAM193A
Gene ID 8603
Gene Full Name family with sequence similarity 193 member A
Gene Alias C4orf8; RES4-22
Transcripts ENSG00000125386
Virus HIV
Gene Type protein coding
HPA Location Info Cytosol;Plasma membrane;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID P78312
HGNC ID HGNC:16822
VEGA ID OTTHUMG00000160512
String ID 9606.ENSP00000324587
PharmGKB ID PA165663979
Target gene [FAM193A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001106 chr4 27 106 80 213 View
4002496 chr4 86 6 92 View
4005749 chr4 19 11 30 View
4009850 chr4 6 4 10 View
4011766 chr4 1 5 6 View
4011767 chr4 5 1 6 View
4013208 chr4 3 1 4 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of FAM193A expression and immune infiltrating cell level correlation result in HIV+ samples
FAM193A expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of FAM193A expression and immune infiltrating cell level correlation result in HIV+ samples
FAM193A expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).