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HPV Target gene Detail Information

> FAM133A Gene Search Result


Gene Information
Gene Name FAM133A
Gene ID 286499
Gene Full Name family with sequence similarity 133 member A
Gene Alias CT115
Transcripts ENSG00000179083
Virus HPV
Gene Type protein coding
HPA Location Info Nucleoli;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q8N9E0
HGNC ID HGNC:26748
VEGA ID OTTHUMG00000021975
String ID 9606.ENSP00000318974
PharmGKB ID PA162386125
Target gene [FAM133A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5201171 chrX 1 3 4 View
5201582 chrX 2 1 3 View
5403918 chrX 2 2 View
5404874 chrX 1 1 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of FAM133A expression and immune infiltrating cell level correlation result in HPV+ samples
FAM133A expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).