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HBV Target gene Detail Information

> ERGIC2 Gene Search Result


Gene Information
Gene Name ERGIC2
Gene ID 51290
Gene Full Name ERGIC and golgi 2
Gene Alias PTX1; CDA14; Erv41; cd002
Transcripts ENSG00000087502
Virus HBV
Gene Type protein coding
HPA Location Info Golgi apparatus;Vesicles;Nucleoli rim;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q96RQ1
HGNC ID HGNC:30208
VEGA ID OTTHUMG00000169322
OMIM ID 612236
String ID 9606.ENSP00000353270
PharmGKB ID PA143485457
Target gene [ERGIC2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1000137 chr12 1051 2673 2003 5727 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of ERGIC2 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
ERGIC2 expression: Low -> High
Lollipop of ERGIC2 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of ERGIC2 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ERGIC2 expression and immune infiltrating cell level correlation result in HBV+ samples
ERGIC2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).