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HBV Target gene Detail Information

> DSCAM Gene Search Result


Gene Information
Gene Name DSCAM
Gene ID 1826
Gene Full Name DS cell adhesion molecule
Gene Alias CHD2; CHD2-42; CHD2-52
Transcripts ENSG00000171587
Virus HBV
Gene Type protein coding
HPA Location Info Golgi apparatus;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Plasma proteins, Predicted membrane proteins
Uniport_ID O60469
HGNC ID HGNC:3039
VEGA ID OTTHUMG00000086732
OMIM ID 602523
String ID 9606.ENSP00000383303
PharmGKB ID PA27491
Target gene [DSCAM] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008237 chr21 14 8 22 View
1008974 chr21 14 3 1 18 View
1014728 chr21 1 2 3 View
1018613 chr21 0 View
1018614 chr21 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of DSCAM expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
DSCAM expression: Low -> High
Lollipop of DSCAM expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of DSCAM expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of DSCAM expression and immune infiltrating cell level correlation result in HBV+ samples
DSCAM expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).