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HPV Target gene Detail Information

> DMRTA2 Gene Search Result


Gene Information
Gene Name DMRTA2
Gene ID 63950
Gene Full Name DMRT like family A2
Transcripts ENSG00000142700
Virus HPV
Gene Type protein coding
HPA Location Info Mitochondria;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins, Transcription factors
Uniport_ID Q96SC8
HGNC ID HGNC:13908
VEGA ID OTTHUMG00000007884
OMIM ID 614804
String ID 9606.ENSP00000383909
PharmGKB ID PA27385
Target gene [DMRTA2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5001236 chr1 41 1 42 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of DMRTA2 expression and immune infiltrating cell level correlation result in HPV+ samples
DMRTA2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).