HTLV1 Target gene Detail Information

> DKK4 Gene Search Result

Gene Information

Gene Name	DKK4
Gene ID	27121
Gene Full Name	dickkopf WNT signaling pathway inhibitor 4
Gene Alias	DKK-4
Transcripts	ENSG00000104371
Virus	HTLV1
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted secreted proteins
Uniport_ID	Q9UBT3
HGNC ID	HGNC:2894
VEGA ID	OTTHUMG00000164167
OMIM ID	605417
String ID	9606.ENSP00000220812
PharmGKB ID	PA27348

Target gene [DKK4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6001318	chr8	409	37	38	484	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of DKK4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DKK4 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of DKK4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DKK4 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of DKK4 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DKK4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).