HTLV1 Target gene Detail Information

> DGCR5 Gene Search Result

Gene Information

Gene Name	DGCR5
Gene ID	26220
Gene Alias	DGCR9; DGS-A; DGS-B; DGCR10; LINC00037; POM121L5P; NCRNA00037
Transcripts	ENSG00000273032
Virus	HTLV1
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:16757
OMIM ID	618040
lncRNASNP2 ID	NONHSAG033246.2
PharmGKB ID	PA38185

Target gene [DGCR5] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6007797	chr22	36	13	2	51	View
6009672	chr22	22	11	2	35	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of DGCR5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DGCR5 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of DGCR5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DGCR5 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of DGCR5 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DGCR5 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).