HIV Target gene Detail Information

> DDX50 Gene Search Result

Gene Information

Gene Name	DDX50
Gene ID	79009
Gene Full Name	DExD-box helicase 50
Gene Alias	GU2; GUB; mcdrh; RH-II/GuB
Transcripts	ENSG00000107625
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli;
HPA Protein Class Info	Enzymes, Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q9BQ39
HGNC ID	HGNC:17906
VEGA ID	OTTHUMG00000018362
OMIM ID	610373
String ID	9606.ENSP00000362687
PharmGKB ID	PA134948525

Target gene [DDX50] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4005685	chr10	28	2		30	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of DDX50 expression and immune infiltrating cell level correlation result in HIV+ samples
DDX50 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of DDX50 expression and immune infiltrating cell level correlation result in HIV+ samples
DDX50 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).