Home
Virus
Gene
Disease
Dataset
Download
Help
 
HBV Target gene Detail Information

> DDX28 Gene Search Result


Gene Information
Gene Name DDX28
Gene ID 55794
Gene Full Name DEAD-box helicase 28
Gene Alias MDDX28
Transcripts ENSG00000182810
Virus HBV
Gene Type protein coding
HPA Location Info Cytosol;Mitochondria;Nucleoli;
HPA Protein Class Info Enzymes, Predicted intracellular proteins
Uniport_ID Q9NUL7
HGNC ID HGNC:17330
VEGA ID OTTHUMG00000137549
OMIM ID 607618
String ID 9606.ENSP00000332340
PharmGKB ID PA27214
Target gene [DDX28] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1402027 chr16 14 7 4 25 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of DDX28 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
DDX28 expression: Low -> High
Lollipop of DDX28 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of DDX28 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of DDX28 expression and immune infiltrating cell level correlation result in HBV+ samples
DDX28 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).