HIV Target gene Detail Information

> DDX23 Gene Search Result

Gene Information

Gene Name	DDX23
Gene ID	9416
Gene Full Name	DEAD-box helicase 23
Gene Alias	prp28; PRPF28; U5-100K; SNRNP100; U5-100KD
Transcripts	ENSG00000174243
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli;Nucleoplasm;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q9BUQ8
HGNC ID	HGNC:17347
VEGA ID	OTTHUMG00000170399
OMIM ID	612172
String ID	9606.ENSP00000310723
PharmGKB ID	PA134934941

Target gene [DDX23] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4011876	chr12	3	3		6	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of DDX23 expression and immune infiltrating cell level correlation result in HIV+ samples
DDX23 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of DDX23 expression and immune infiltrating cell level correlation result in HIV+ samples
DDX23 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).