HTLV1 Target gene Detail Information

> DCLK2 Gene Search Result


Gene Information
Gene Name DCLK2
Gene ID 166614
Gene Full Name doublecortin like kinase 2
Gene Alias CL2; DCK2; CLIK2; DCDC3; CLICK2; DCDC3B; DCAMKL2; CLICK-II
Transcripts ENSG00000170390
Virus HTLV1
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Enzymes, Predicted intracellular proteins
Uniport_ID Q8N568
HGNC ID HGNC:19002
VEGA ID OTTHUMG00000161444
OMIM ID 613166
String ID 9606.ENSP00000303887
Drugbank ID BE0009384
PharmGKB ID PA162383366
Target gene [DCLK2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006514 chr4 38 16 13 67 View
6018178 chr4 9 9 View
6023053 chr4 4 4 View
6024968 chr4 3 3 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of DCLK2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DCLK2 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of DCLK2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
DCLK2 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).