HPV Target gene Detail Information

> CXCL1 Gene Search Result

Gene Information

Gene Name	CXCL1
Gene ID	2919
Gene Full Name	C-X-C motif chemokine ligand 1
Gene Alias	FSP; GRO1; GROa; MGSA; NAP-3; SCYB1; MGSA-a
Transcripts	ENSG00000163739
Virus	HPV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Cancer-related genes, Plasma proteins, Predicted secreted proteins
Gene Function	Oncogene
Uniport_ID	P09341
HGNC ID	HGNC:4602
VEGA ID	OTTHUMG00000160866
OMIM ID	155730
String ID	9606.ENSP00000379110
PharmGKB ID	PA35050

Target gene [CXCL1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5300251	chr4	123	108	37	268	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE40774 (GEO)	Head and neck squamous cell carcinoma	134	Head and neck Squamous cell carcinomas GLOTTIC LARYNX (EBV-)(2), Head and neck Squamous cell carcinomas HYPOPHARYNX (EBV-)(9), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV-)(23), Head and neck Squamous cell carcinomas ORAL CAVITY (EBV+)(2), Head and neck Squamous cell carcinomas OROPHARYNX (EBV-)(22), Head and neck Squamous cell carcinomas OROPHARYNX (EBV+)(54), Head and neck Squamous cell carcinomas OTHER (EBV+)(1), Head and neck Squamous cell carcinomas SUBGLOTTIC LARYNX (EBV-)(1), Head and neck Squamous cell carcinomas SUPRAGLOTTIC (EBV-)(19), Squamous cell carcinomas SUPRAGLOTTIC (EBV+)(1)
GSE138080 (GEO)	Cervical intraepithelial neoplasia	25	Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE40774
HeatMap of cell type fractions in all samples	Lollipop of CXCL1 expression and immune infiltrating cell level correlation result in HPV+ samples
CXCL1 expression: Low -> High

> Dataset: GSE138080
HeatMap of cell type fractions in all samples	Lollipop of CXCL1 expression and immune infiltrating cell level correlation result in HPV+ samples
CXCL1 expression: Low -> High

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of CXCL1 expression and immune infiltrating cell level correlation result in HPV+ samples
CXCL1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).