HIV Target gene Detail Information

> CTC-338M12.4 Gene Search Result

Gene Information

Gene Name	CTC-338M12.4
Gene ID	101928649
Gene Full Name	uncharacterized LOC101928649
Transcripts	ENSG00000233937
Virus	HIV
Gene Type	ncRNA
HPA Location Info
VEGA ID	OTTHUMG00000163003

Target gene [CTC-338M12.4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006650	chr5	22	1		23	View
4008207	chr5	14	2		16	View
4011522	chr5	3	1	2	6	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CTC-338M12.4 expression and immune infiltrating cell level correlation result in HIV+ samples
CTC-338M12.4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).