HIV Target gene Detail Information

> CSNK1D Gene Search Result

Gene Information

Gene Name	CSNK1D
Gene ID	1453
Gene Full Name	casein kinase 1 delta
Gene Alias	ASPS; CKId; HCKID; FASPS2; CKIdelta; CKI-delta
Transcripts	ENSG00000141551
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli fibrillar center;Nucleoplasm;
HPA Protein Class Info	Disease related genes, Enzymes, Plasma proteins, Potential drug targets, Predicted intracellular proteins
Uniport_ID	P48730
HGNC ID	HGNC:2452
VEGA ID	OTTHUMG00000178601
OMIM ID	600864
String ID	9606.ENSP00000324464
PharmGKB ID	PA26952

Target gene [CSNK1D] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4003353	chr17	54	9		63	View
4004719	chr17	14	25	1	40	View
4009025	chr17	11	2		13	View
4009834	chr17	8	2		10	View
4013635	chr17	1	2		3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CSNK1D expression and immune infiltrating cell level correlation result in HIV+ samples
CSNK1D expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CSNK1D expression and immune infiltrating cell level correlation result in HIV+ samples
CSNK1D expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).