HIV Target gene Detail Information

> CSGALNACT2 Gene Search Result

Gene Information

Gene Name	CSGALNACT2
Gene ID	55454
Gene Full Name	chondroitin sulfate N-acetylgalactosaminyltransferase 2
Gene Alias	CHGN2; ChGn-2; PRO0082; GALNACT2; GALNACT-2; beta4GalNAcT
Transcripts	ENSG00000169826
Virus	HIV
Gene Type	protein coding
HPA Location Info	Endoplasmic reticulum;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q8N6G5
HGNC ID	HGNC:24292
VEGA ID	OTTHUMG00000018023
OMIM ID	616616
String ID	9606.ENSP00000363590
PharmGKB ID	PA162382854

Target gene [CSGALNACT2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001666	chr10	105	11	26	142	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CSGALNACT2 expression and immune infiltrating cell level correlation result in HIV+ samples
CSGALNACT2 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CSGALNACT2 expression and immune infiltrating cell level correlation result in HIV+ samples
CSGALNACT2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).