HIV Target gene Detail Information

> COPB1 Gene Search Result

Gene Information

Gene Name	COPB1
Gene ID	1315
Gene Full Name	coatomer protein complex subunit beta 1
Gene Alias	COPB
Transcripts	ENSG00000129083
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Golgi apparatus;Vesicles;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	P53618
HGNC ID	HGNC:2231
VEGA ID	OTTHUMG00000165824
OMIM ID	600959
String ID	9606.ENSP00000249923
PharmGKB ID	PA26747

Target gene [COPB1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008392	chr11	14	1		15	View
4013378	chr11		2	1	3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of COPB1 expression and immune infiltrating cell level correlation result in HIV+ samples
COPB1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of COPB1 expression and immune infiltrating cell level correlation result in HIV+ samples
COPB1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).