HIV Target gene Detail Information

> COLGALT2 Gene Search Result

Gene Information

Gene Name	COLGALT2
Gene ID	23127
Gene Full Name	collagen beta(1-O)galactosyltransferase 2
Gene Alias	C1orf17; GLT25D2; ColGalT 2
Transcripts	ENSG00000198756
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Vesicles;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q8IYK4
HGNC ID	HGNC:16790
VEGA ID	OTTHUMG00000035460
OMIM ID	617533
String ID	9606.ENSP00000354960
PharmGKB ID	PA25606

Target gene [COLGALT2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000472	chr1	392	31	15	438	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of COLGALT2 expression and immune infiltrating cell level correlation result in HIV+ samples
COLGALT2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).