HBV Target gene Detail Information

> COL19A1 Gene Search Result

Gene Information

Gene Name	COL19A1
Gene ID	1310
Gene Full Name	collagen type XIX alpha 1 chain
Gene Alias	COL9A1L; D6S228E
Transcripts	ENSG00000082293
Virus	HBV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID	Q14993
HGNC ID	HGNC:2196
VEGA ID	OTTHUMG00000014987
OMIM ID	120165
String ID	9606.ENSP00000480474
PharmGKB ID	PA26712

Target gene [COL19A1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1011969	chr6	3	5		8	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of COL19A1 expression and immune infiltrating cell level correlation result in HBV+ samples
COL19A1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).