HIV Target gene Detail Information

> COL12A1 Gene Search Result

Gene Information

Gene Name	COL12A1
Gene ID	1303
Gene Full Name	collagen type XII alpha 1 chain
Gene Alias	UCMD2; BTHLM2; EDSMYP; COL12A1L; BA209D8.1; DJ234P15.1
Transcripts	ENSG00000111799
Virus	HIV
Gene Type	protein coding
HPA Location Info	Vesicles;Cytosol;Predicted to be secreted;
HPA Protein Class Info	Disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID	Q99715
HGNC ID	HGNC:2188
VEGA ID	OTTHUMG00000015051
OMIM ID	120320
String ID	9606.ENSP00000325146
PharmGKB ID	PA26704

Target gene [COL12A1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004168	chr6	14	11	23	48	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of COL12A1 expression and immune infiltrating cell level correlation result in HIV+ samples
COL12A1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).