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HTLV1 Target gene Detail Information

> COL11A1 Gene Search Result


Gene Information
Gene Name COL11A1
Gene ID 1301
Gene Full Name collagen type XI alpha 1 chain
Gene Alias STL2; COLL6; CO11A1
Transcripts ENSG00000060718
Virus HTLV1
Gene Type protein coding
HPA Location Info Endoplasmic reticulum;Predicted to be secreted;
HPA Protein Class Info Cancer-related genes, Disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID P12107
HGNC ID HGNC:2186
VEGA ID OTTHUMG00000010872
OMIM ID 120280
String ID 9606.ENSP00000359114
PharmGKB ID PA26702
Target gene [COL11A1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6021571 chr1 1 1 4 6 View
6026008 chr1 2 2 View
6027439 chr1 2 2 View
6030097 chr1 1 1 View
6033218 chr1 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of COL11A1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
COL11A1 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of COL11A1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
COL11A1 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of COL11A1 expression and immune infiltrating cell level correlation result in HTLV1+ samples
COL11A1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).