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HBV Target gene Detail Information

> CNTN5 Gene Search Result


Gene Information
Gene Name CNTN5
Gene ID 53942
Gene Full Name contactin 5
Gene Alias NB-2; HNB-2s
Transcripts ENSG00000149972
Virus HBV
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID O94779
HGNC ID HGNC:2175
VEGA ID OTTHUMG00000167579
OMIM ID 607219
String ID 9606.ENSP00000435637
PharmGKB ID PA26689
Target gene [CNTN5] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1007211 chr11 8 14 7 29 View
1007212 chr11 8 14 7 29 View
1014789 chr11 3 3 View
1017129 chr11 1 1 View
1017900 chr11 0 View
1018070 chr11 0 View
1019131 chr11 0 View
1019739 chr11 0 View
1400386 chr11 4 2 6 View
1400387 chr11 65 4 5 74 View
1401567 chr11 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of CNTN5 expression and immune infiltrating cell level correlation result in HBV+ samples
CNTN5 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).