HIV Target gene Detail Information

> CNOT6 Gene Search Result

Gene Information

Gene Name	CNOT6
Gene ID	57472
Gene Full Name	CCR4-NOT transcription complex subunit 6
Gene Alias	CCR4; Ccr4a
Transcripts	ENSG00000113300
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q9ULM6
HGNC ID	HGNC:14099
VEGA ID	OTTHUMG00000130935
OMIM ID	608951
String ID	9606.ENSP00000377024
PharmGKB ID	PA26677

Target gene [CNOT6] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4003685	chr5	53	3		56	View
4005033	chr5	6	25	5	36	View
4014635	chr5	2			2	View
4015419	chr5	1			1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CNOT6 expression and immune infiltrating cell level correlation result in HIV+ samples
CNOT6 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CNOT6 expression and immune infiltrating cell level correlation result in HIV+ samples
CNOT6 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).