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HBV Target gene Detail Information

> CLSTN3 Gene Search Result


Gene Information
Gene Name CLSTN3
Gene ID 9746
Gene Full Name calsyntenin 3
Gene Alias CSTN3; CDHR14; alcbeta
Transcripts ENSG00000288427
Virus HBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9BQT9
HGNC ID HGNC:18371
VEGA ID OTTHUMG00000168167
OMIM ID 611324
String ID 9606.ENSP00000266546
PharmGKB ID PA38320
Target gene [CLSTN3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1010424 chr12 6 6 12 View
1010454 chr12 6 6 12 View
1012791 chr12 4 2 6 View
1012860 chr12 4 2 6 View
1014018 chr12 3 1 4 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of CLSTN3 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
CLSTN3 expression: Low -> High
Lollipop of CLSTN3 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of CLSTN3 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of CLSTN3 expression and immune infiltrating cell level correlation result in HBV+ samples
CLSTN3 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).