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HBV Target gene Detail Information

> CKAP5 Gene Search Result


Gene Information
Gene Name CKAP5
Gene ID 9793
Gene Full Name cytoskeleton associated protein 5
Gene Alias TOG; MSPS; TOGp; CHTOG; ch-TOG
Transcripts ENSG00000175216
Virus HBV
Gene Type protein coding
HPA Location Info Centrosome;Plasma membrane;Nucleoli;Nucleoli rim;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q14008
HGNC ID HGNC:28959
VEGA ID OTTHUMG00000166599
OMIM ID 611142
String ID 9606.ENSP00000432768
PharmGKB ID PA142672107
Target gene [CKAP5] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002611 chr11 39 64 136 239 View
1006195 chr11 12 29 1 42 View
1008346 chr11 9 11 1 21 View
1014903 chr2 2 1 3 View
1019215 chr2 0 View
1019757 chr2 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of CKAP5 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
CKAP5 expression: Low -> High
Lollipop of CKAP5 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of CKAP5 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of CKAP5 expression and immune infiltrating cell level correlation result in HBV+ samples
CKAP5 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).