HBV Target gene Detail Information

> CEP290 Gene Search Result

Gene Information

Gene Name	CEP290
Gene ID	80184
Gene Full Name	centrosomal protein 290
Gene Alias	CT87; MKS4; POC3; rd16; BBS14; JBTS5; LCA10; NPHP6; SLSN6; 3H11Ag
Transcripts	ENSG00000198707
Virus	HBV
Gene Type	protein coding
HPA Location Info	Centrosome;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	O15078
HGNC ID	HGNC:29021
VEGA ID	OTTHUMG00000169871
OMIM ID	610142
String ID	9606.ENSP00000448012
PharmGKB ID	PA143485433

Target gene [CEP290] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1019482	chr12				0	View
1019483	chr12				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of CEP290 expression and immune infiltrating cell level correlation result in HBV+ samples
CEP290 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).