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HIV Target gene Detail Information

> CEACAM21 Gene Search Result


Gene Information
Gene Name CEACAM21
Gene ID 90273
Gene Full Name carcinoembryonic antigen related cell adhesion molecule 21
Gene Alias CEACAM3; R29124_1
Transcripts ENSG00000278565
Virus HIV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins
Uniport_ID Q3KPI0
HGNC ID HGNC:28834
VEGA ID OTTHUMG00000189950
OMIM ID 618191
String ID 9606.ENSP00000385739
PharmGKB ID PA142672135
Target gene [CEACAM21] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000147 chr19 196 268 417 881 View
4002638 chr19 81 5 86 View
4005739 chr19 29 1 30 View
4005740 chr19 29 1 30 View
4006008 chr19 27 1 28 View
4006688 chr19 22 1 23 View
4006748 chr19 21 2 23 View
4006828 chr19 22 22 View
4007199 chr19 20 20 View
4007352 chr19 19 1 20 View
4009771 chr19 10 10 View
4010720 chr19 8 8 View
4011079 chr19 6 1 7 View
4011228 chr19 4 3 7 View
4011464 chr19 7 7 View
4011900 chr19 6 6 View
4012275 chr19 1 4 5 View
4013465 chr19 2 1 3 View
4014412 chr19 2 2 View
4016091 chr19 0 View
4016272 chr19 0 View
4016621 chr19 0 View
4300081 chr19 4 4 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of CEACAM21 expression and immune infiltrating cell level correlation result in HIV+ samples
CEACAM21 expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of CEACAM21 expression and immune infiltrating cell level correlation result in HIV+ samples
CEACAM21 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).