HTLV1 Target gene Detail Information

> CDS2 Gene Search Result

Gene Information

Gene Name	CDS2
Gene ID	8760
Gene Full Name	CDP-diacylglycerol synthase 2
Transcripts	ENSG00000101290
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Endoplasmic reticulum;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Enzymes, Plasma proteins, Predicted membrane proteins
Uniport_ID	O95674
HGNC ID	HGNC:1801
VEGA ID	OTTHUMG00000031801
OMIM ID	603549
String ID	9606.ENSP00000419879
PharmGKB ID	PA26347

Target gene [CDS2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6003627	chr20	42	75	32	149	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of CDS2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
CDS2 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of CDS2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
CDS2 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of CDS2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
CDS2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).