HIV Target gene Detail Information

> CDRT1 Gene Search Result

Gene Information

Gene Name	CDRT1
Gene ID	374286
Gene Full Name	CMT1A duplicated region transcript 1
Gene Alias	HREP; SM25H2; C170RF1; C17ORF1; FBXW10B; C17ORF1A; FBXW10P1
Transcripts	ENSG00000241322
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	O95170
HGNC ID	HGNC:14379
VEGA ID	OTTHUMG00000059074
OMIM ID	604596
String ID	9606.ENSP00000379242
PharmGKB ID	PA134869447

Target gene [CDRT1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4010298	chr17	3	6		9	View
4016244	chr17				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CDRT1 expression and immune infiltrating cell level correlation result in HIV+ samples
CDRT1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).