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HTLV1 Target gene Detail Information

> CDH7 Gene Search Result


Gene Information
Gene Name CDH7
Gene ID 1005
Gene Full Name cadherin 7
Gene Alias CDH7L1
Transcripts ENSG00000081138
Virus HTLV1
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins
Uniport_ID Q9ULB5
HGNC ID HGNC:1766
VEGA ID OTTHUMG00000132800
OMIM ID 605806
String ID 9606.ENSP00000381058
PharmGKB ID PA26303
Target gene [CDH7] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6013090 chr4 15 1 4 20 View
6013874 chr4 7 11 18 View
6017125 chr4 10 1 11 View
6023243 chr18 1 3 4 View
6024805 chr4 3 3 View
6024900 chr4 1 2 3 View
6030280 chr4 1 1 View
6030626 chr4 0 View
6031989 chr4 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of CDH7 expression and immune infiltrating cell level correlation result in HTLV1+ samples
CDH7 expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of CDH7 expression and immune infiltrating cell level correlation result in HTLV1+ samples
CDH7 expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of CDH7 expression and immune infiltrating cell level correlation result in HTLV1+ samples
CDH7 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).