HPV Target gene Detail Information

> CDH16 Gene Search Result

Gene Information

Gene Name	CDH16
Gene ID	1014
Gene Full Name	cadherin 16
Transcripts	ENSG00000166589
Virus	HPV
Gene Type	protein coding
HPA Location Info
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	O75309
HGNC ID	HGNC:1755
VEGA ID	OTTHUMG00000137518
OMIM ID	603118
String ID	9606.ENSP00000299752
PharmGKB ID	PA26289

Target gene [CDH16] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5300236	chr16	13	3		16	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE138080 (GEO)	Cervical intraepithelial neoplasia	25	Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE138080
HeatMap of cell type fractions in all samples	Lollipop of CDH16 expression and immune infiltrating cell level correlation result in HPV+ samples
CDH16 expression: Low -> High

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of CDH16 expression and immune infiltrating cell level correlation result in HPV+ samples
CDH16 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).