HTLV1 Target gene Detail Information

> CD3D Gene Search Result


Gene Information
Gene Name CD3D
Gene ID 915
Gene Full Name CD3d molecule
Gene Alias T3D; IMD19; CD3-DELTA
Transcripts ENSG00000167286
Virus HTLV1
Gene Type protein coding
HPA Location Info Endoplasmic reticulum;
Membrane Info Predicted membrane proteins
HPA Protein Class Info CD markers, Disease related genes, FDA approved drug targets, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID P04234
HGNC ID HGNC:1673
VEGA ID OTTHUMG00000166970
OMIM ID 186790
String ID 9606.ENSP00000300692
Drugbank ID BE0003456
PharmGKB ID PA26215
Target gene [CD3D] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6007379 chr11 53 2 1 56 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of CD3D expression and immune infiltrating cell level correlation result in HTLV1+ samples
CD3D expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of CD3D expression and immune infiltrating cell level correlation result in HTLV1+ samples
CD3D expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of CD3D expression and immune infiltrating cell level correlation result in HTLV1+ samples
CD3D expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).