HIV Target gene Detail Information

> CCNF Gene Search Result

Gene Information

Gene Name	CCNF
Gene ID	899
Gene Full Name	cyclin F
Gene Alias	FBX1; FBXO1
Transcripts	ENSG00000162063
Virus	HIV
Gene Type	protein coding
HPA Location Info	Centrosome;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	P41002
HGNC ID	HGNC:1591
VEGA ID	OTTHUMG00000128858
OMIM ID	600227
String ID	9606.ENSP00000380256
PharmGKB ID	PA26156

Target gene [CCNF] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002977	chr16	71	2		73	View
4003345	chr16	63			63	View
4004705	chr16	36	4		40	View
4005842	chr16	27	1	1	29	View
4010288	chr16	9			9	View
4013609	chr16	1	1	1	3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CCNF expression and immune infiltrating cell level correlation result in HIV+ samples
CCNF expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CCNF expression and immune infiltrating cell level correlation result in HIV+ samples
CCNF expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).