HBV Target gene Detail Information

> CCDC88A Gene Search Result

Gene Information

Gene Name	CCDC88A
Gene ID	55704
Gene Full Name	coiled-coil domain containing 88A
Gene Alias	APE; GIV; GRDN; PEHO; HkRP1; PEHOL; GIRDIN; KIAA1212
Transcripts	ENSG00000115355
Virus	HBV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	Q3V6T2
HGNC ID	HGNC:25523
VEGA ID	OTTHUMG00000151915
OMIM ID	609736
String ID	9606.ENSP00000338728
PharmGKB ID	PA162381751

Target gene [CCDC88A] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1012723	chr2	4	2		6	View
1013287	chr2	2	3		5	View
1014708	chr2	2	1		3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of CCDC88A expression and immune infiltrating cell level correlation result in HBV+ samples
CCDC88A expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).