HIV Target gene Detail Information

> CCDC47 Gene Search Result

Gene Information

Gene Name	CCDC47
Gene ID	57003
Gene Full Name	coiled-coil domain containing 47
Gene Alias	GK001; MSTP041
Transcripts	ENSG00000108588
Virus	HIV
Gene Type	protein coding
HPA Location Info	Endoplasmic reticulum;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q96A33
HGNC ID	HGNC:24856
VEGA ID	OTTHUMG00000178933
OMIM ID	618260
String ID	9606.ENSP00000225726
PharmGKB ID	PA142672164

Target gene [CCDC47] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4005273	chr17	26	8		34	View
4007449	chr17	12	4	3	19	View
4010568	chr17	8			8	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CCDC47 expression and immune infiltrating cell level correlation result in HIV+ samples
CCDC47 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CCDC47 expression and immune infiltrating cell level correlation result in HIV+ samples
CCDC47 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).